Publications

Poivet, Gallot, Montagné, Senin, Monsempès, Legeai & Jacquin-Joly (2021)

Poivet, E., Gallot, A., Montagné, N., Senin, P., Monsempès, C., Legeai, F. & Jacquin-Joly, E. (2021). Transcriptome profiling of starvation in the peripheral chemosensory organs of the crop pest Spodoptera littoralis caterpillars. Insects, 12(7). 573.

Aubé, Senin, Bonin, Pringault, Jeziorski, Bouchez, Klopp, Guyoneaud & Goñi-Urriza (2020)

Aubé, J., Senin, P., Bonin, P., Pringault, O., Jeziorski, C., Bouchez, O., Klopp, C., Guyoneaud, R. & Goñi-Urriza, M. (2020). Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning. Microbial Ecology. 1–10.

Senin, Lin, Wang, Oates, Gandhi, Boedihardjo, Chen & Frankenstein (2018)

Senin, P., Lin, J., Wang, X., Oates, T., Gandhi, S., Boedihardjo, A., Chen, C. & Frankenstein, S. (2018). Grammarviz 3.0: Interactive discovery of variable-length time series patterns. ACM Transactions on Knowledge Discovery from Data (TKDD), 12(1). 1–28.

Forestier, Petitjean, Senin, Despinoy, Huaulmé, Fawaz, Weber, Idoumghar, Muller & Jannin (2018)

Forestier, G., Petitjean, F., Senin, P., Despinoy, F., Huaulmé, A., Fawaz, H., Weber, J., Idoumghar, L., Muller, P. & Jannin, P. (2018). Surgical motion analysis using discriminative interpretable patterns. Artificial intelligence in medicine, 91. 3–11.

Forestier, Petitjean, Senin, Riffaud, Henaux & Jannin (2017)

Forestier, G., Petitjean, F., Senin, P., Riffaud, L., Henaux, P. & Jannin, P. (2017). Finding discriminative and interpretable patterns in sequences of surgical activities. Artificial Intelligence in Medicine, 82. 11–19.

Forestier, Petitjean, Senin, Despinoy & Jannin (2017)

Forestier, G., Petitjean, F., Senin, P., Despinoy, F. & Jannin, P. (2017). Discovering discriminative and interpretable patterns for surgical motion analysis. Springer, Cham.

Chen, Boedihardjo, Jenkins, Ellison, Lin, Senin & Oates (2017)

Chen, C., Boedihardjo, A., Jenkins, B., Ellison, C., Lin, J., Senin, P. & Oates, T. (2017). STAVIS 2.0: Mining Spatial Trajectories via Motifs. Springer, Cham.

Chain, Davenport, Li, Lo, Xu, Senin, Shakya, Ahmed, Hamilton, Bishop-Lilly & others (2017)

Chain, P., Davenport, K., Li, P., Lo, C., Xu, Y., Senin, P., Shakya, M., Ahmed, S., Hamilton, T., Bishop-Lilly, K. & others (2017). EDGE 2017 R&D 100 Entry with Appendix. Los Alamos National Lab.(LANL), Los Alamos, NM (United States).

Chain, Lo, Li, Davenport, Xu, Ahmed, Senin, Shakya, Bishop-Lilly, Anderson & others (2017)

Chain, P., Lo, C., Li, P., Davenport, K., Xu, Y., Ahmed, S., Senin, P., Shakya, M., Bishop-Lilly, K., Anderson, J. & others (2017). Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform, Version 1.5 and 1. x.. Los Alamos National Lab.(LANL), Los Alamos, NM (United States).

Wang, Lin, Senin, Oates, Gandhi, Boedihardjo, Chen & Frankenstein (2016)

Wang, X., Lin, J., Senin, P., Oates, T., Gandhi, S., Boedihardjo, A., Chen, C. & Frankenstein, S. (2016). RPM: Representative Pattern Mining for Efficient Time Series Classification.

Aubé, Senin, Pringault, Bonin, Deflandre, Bouchez, Bru, Biritxinaga-Etchart, Klopp, Guyoneaud & others (2016)

Aubé, J., Senin, P., Pringault, O., Bonin, P., Deflandre, B., Bouchez, O., Bru, N., Biritxinaga-Etchart, E., Klopp, C., Guyoneaud, R. & others (2016). The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats. Marine pollution bulletin, 111(1-2). 115–125.

Senin, Lin, Wang, Oates, Gandhi, Boedihardjo, Chen & Frankenstein (2015)

Senin, P., Lin, J., Wang, X., Oates, T., Gandhi, S., Boedihardjo, A., Chen, C. & Frankenstein, S. (2015). Time series anomaly discovery with grammar-based compression.

Senin (2015)

Senin, P. (2015). Software Trajectory Analysis: An empirically based method for automated software process discovery. University of Hawai'i at Manoa.

Rupp, Senin, Sarry, Allain, Tasca, Ligat, Portes, Woloszyn, Bouchez, Tabouret & others (2015)

Rupp, R., Senin, P., Sarry, J., Allain, C., Tasca, C., Ligat, L., Portes, D., Woloszyn, F., Bouchez, O., Tabouret, G. & others (2015). A Point Mutation in Suppressor of Cytokine Signalling 2 ( Socs2 ) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model. PLoS Genetics.

Rupp, Foucras, Senin, Sarry, Allain, Portes, Bouchez & Tosser-Klopp (2015)

Rupp, R., Foucras, G., Senin, P., Sarry, J., Allain, C., Portes, D., Bouchez, O. & Tosser-Klopp, G. (2015). Identification et caractérisation d’une mutation dans le gène SOCS2 (Suppressor of Cytokine Signalling 2) associée à la sensibilité aux mammites chez les ovins laitiers. Institut de l'Elevage-INRA.

Pringault, Aube, Bouchez, Klopp, Mariette, Escudie, Senin & Goni-Urriza (2015)

Pringault, O., Aube, J., Bouchez, O., Klopp, C., Mariette, J., Escudie, F., Senin, P. & Goni-Urriza, M. (2015). Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat. Chemosphere, 135. 189–201.

Gandhi, Oates, Boedihardjo, Chen, Lin, Senin, Frankenstein & Wang (2015)

Gandhi, S., Oates, T., Boedihardjo, A., Chen, C., Lin, J., Senin, P., Frankenstein, S. & Wang, X. (2015). A generative model for time series discretization based on multiple normal distributions.

Senin, Lin, Wang, Oates, Gandhi, Boedihardjo, Chen, Frankenstein & Lerner (2014)

Senin, P., Lin, J., Wang, X., Oates, T., Gandhi, S., Boedihardjo, A., Chen, C., Frankenstein, S. & Lerner, M. (2014). GrammarViz 2.0: A Tool for Grammar-Based Pattern Discovery in Time Series. Springer Berlin Heidelberg.

Otunba, Lin & Senin (2014)

Otunba, R., Lin, J. & Senin, P. (2014). MBPD: Motif-Based Period Detection. Springer International Publishing.

Senin & Malinchik (2013)

Senin, P. & Malinchik, S. (2013). SAX-VSM: Interpretable Time Series Classification Using SAX and Vector Space Model. IEEE.

Rupp, Senin, Sarry, Bouchez, Foucras & Tosser-Klopp (2013)

Rupp, R., Senin, P., Sarry, J., Bouchez, O., Foucras, G. & Tosser-Klopp, G. (2013). Fine mapping of a QTL for mastitis resistance on OAR3 in Lacaune dairy sheep. Wageningen Academic Publishers.

Maza, Frasse, Senin, Bouzayen & Zouine (2013)

Maza, E., Frasse, P., Senin, P., Bouzayen, M. & Zouine, M. (2013). Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes. Communicative & Integrative Biology, 6(6).

Senin (2012)

Senin, P. (2012). Recognizing recurrent development behaviors corresponding to Android OS release life-cycle.

Roustan & Senin (2012)

Roustan, J. & Senin, P. (2012). La transition fruit immature/fruit mature: analyse globale des profils transcriptomiques.

Woyke, Xie, Copeland, González, Han, Kiss, Saw, Senin, Yang, Chatterji & others (2009)

Woyke, T., Xie, G., Copeland, A., González, J., Han, C., Kiss, H., Saw, J., Senin, P., Yang, C., Chatterji, S. & others (2009). Assembling the marine metagenome, one cell at a time. PLoS One, 4(4). e5299.

Johnson, Zhang & Senin (2009)

Johnson, P., Zhang, S. & Senin, P. (2009). Experiences with hackystat as a service-oriented architecture. University of Hawaii, Honolulu.

Xie, Han, Kiss, Saw, Senin, Woyke, Copeland, Gonzalez, Chatterji, Cheng & others (2008)

Xie, G., Han, S., Kiss, H., Saw, J., Senin, P., Woyke, T., Copeland, A., Gonzalez, J., Chatterji, S., Cheng, J. & others (2008). Assembling the marine metagenome, one cell at a time. Los Alamos National Lab.(LANL), Los Alamos, NM (United States).

Woyke, Copeland, Xie, Han, Cheng, Kiss, Saw, Senin, Sieracki & Stepanauskas (2008)

Woyke, T., Copeland, A., Xie, G., Han, C., Cheng, J., Kiss, H., Saw, J., Senin, P., Sieracki, M. & Stepanauskas, R. (2008). Single cell genome reconstruction of two uncultured, proteorhodopsin-containing Flavobacteria.

Senin (2008)

Senin, P. (2008). Dynamic time warping algorithm review. CSDL Technical report.

Ming, Hou, Feng, Yu, Dionne-Laporte, Saw, Senin, Wang, Ly, Lewis & others (2008)

Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J., Senin, P., Wang, W., Ly, B., Lewis, K. & others (2008). The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature, 452(7190). 991–996.

SAW & SENIN (2008)

SAW, J. & SENIN, P. (2008). Oral Pathogen Sequence Databases at Los Alamos National Laboratory.

Hou, Makarova, Saw, Senin, Ly, Zhou, Ren, Wang, Galperin, Omelchenko & others (2008)

Hou, S., Makarova, K., Saw, J., Senin, P., Ly, B., Zhou, Z., Ren, Y., Wang, J., Galperin, M., Omelchenko, M. & others (2008). Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. Biology Direct, 3(1). 26.

Senin & Keane (2007)

Senin, P. & Keane, J. (2007). MCMC simulation of interstellar grain chemistry. UNIVERSITY OF HAWAII.

Dunfield, Yuryev, Senin, Smirnova, Stott, Hou, Ly, Saw, Zhou, Ren & others (2007)

Dunfield, P., Yuryev, A., Senin, P., Smirnova, A., Stott, M., Hou, S., Ly, B., Saw, J., Zhou, Z., Ren, Y. & others (2007). Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature, 450(7171). 879–882.